PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00442.1.g00030.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 310aa    MW: 33300.5 Da    PI: 5.5374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00442.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17169216555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zpz_sc00442.1.g00030.1.sm.mk 169 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 216
                                   9*****.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.18166224IPR001471AP2/ERF domain
PRINTSPR003674.6E-10167178IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-21168226IPR016177DNA-binding domain
CDDcd000181.88E-15169225No hitNo description
SMARTSM003801.6E-31169230IPR001471AP2/ERF domain
PfamPF008472.8E-12169216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-27169225IPR001471AP2/ERF domain
PRINTSPR003674.6E-10206226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEPQFGNGLY YGNGYSFTCY DENSYSDNMA ATGLYQPSSI CASQQYGGGG YNHQSSSPAE  60
WISSSSMSSA YSHHHSYQQQ IHFGGGVDEY YGCKVEEAMG AVDMDHVSAL MGAASISKTT  120
SDGSSASGTY APESCWTTEH HGEAFAASRS SSATTDGSNG SGDDAPLIGV RKRPWGKYAA  180
EIRDSTRNGE RVWIGTFDTP EAAALAYDQA AYSMRGPSAV LNFPVRHVQE TLRELGLSGG  240
AAAGDSPVLV LKRRHCIRKR SPKTKKVAGE EQRMATSRGH GKQMQSASCV LELEDLGPDY  300
LEELLALSYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-24169226562ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251265KRRHCIRKRSPKTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459509.11e-94hypothetical protein SORBIDRAFT_02g005840
TrEMBLC5XCK51e-94C5XCK5_SORBI; Putative uncharacterized protein Sb02g005840
STRINGSb02g005840.14e-94(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-32ethylene response factor 1